Human hg19 http://igvdata.broadinstitute.org/genomes/hg19.genome hg19 Human (b37) http://igvdata.broadinstitute.org/genomes/b37.genome b37 Human hg18 http://igvdata.broadinstitute.org/genomes/hg18.genome hg18 Human (1kg reference, b36) http://igvdata.broadinstitute.org/genomes/1kg_ref.genome 1kg_ref Human hg17 http://igvdata.broadinstitute.org/genomes/hg17.genome hg17 Human hg16 http://igvdata.broadinstitute.org/genomes/hg16.genome hg16 Mouse mm9 http://igvdata.broadinstitute.org/genomes/mm9.genome mm9 Mouse mm8 http://igvdata.broadinstitute.org/genomes/mm8.genome mm8 Mouse mm7 http://igvdata.broadinstitute.org/genomes/mm7.genome mm7 Chimp (panTro2) http://igvdata.broadinstitute.org/genomes/panTro2.genome panTro2 Rhesus (rheMac2) http://igvdata.broadinstitute.org/genomes/rheMac2.genome rheMac2 Rat (rn4) http://igv.broadinstitute.org/genomes/rn4.genome rn4 Dog (canFam2) http://igvdata.broadinstitute.org/genomes/canFam2.genome canFam2 Cow (bosTau6) http://igvdata.broadinstitute.org/genomes/bosTau6.genome bosTau6 Cow (bosTau4) http://igvdata.broadinstitute.org/genomes/bosTau4.genome bosTau4 Cow (bosTau3) http://igvdata.broadinstitute.org/genomes/bosTau3.genome bosTau3 Horse (equCab2) http://igvdata.broadinstitute.org/genomes/equCab2.genome equCab2 Sus Scrofa (9.56) http://igvdata.broadinstitute.org/genomes/susScrofa.genome susScrofa Chicken (galGal3) http://igvdata.broadinstitute.org/genomes/galGal3.genome galGal3 Guinea Pig (cavPor3) http://igvdata.broadinstitute.org/genomes/cavPor3.genome cavPor3 Opossum (monDom5) http://igvdata.broadinstitute.org/genomes/monDom5.genome monDom5 Ferret (MusPutFur1.0) http://igvdata.broadinstitute.org/genomes/MusPutFur1.0.genome MusPutFur1.0 X. tropicalis (xenTro2) http://igvdata.broadinstitute.org/genomes/xenTro2.genome xenTro2 Zebra Finch (taeGut1) http://igvdata.broadinstitute.org/genomes/taeGut1.genome taeGut1 Zebrafish (Zv7/danRer5) http://igvdata.broadinstitute.org/genomes/zebrafish.genome zebrafish Zebrafish (Zv8/danRer6) http://igvdata.broadinstitute.org/genomes/danRer6.genome danRer6 Zebrafish (Zv9/danRer7) http://igvdata.broadinstitute.org/genomes/danRer7.genome danRer7 Stickleback (gasAcu1) http://igvdata.broadinstitute.org/genomes/gasAcu1.genome gasAcu1 Aplysia http://igvdata.broadinstitute.org/genomes/Aplysia.genome Aplysia Plasmodium (3D7 v2.1) http://igvdata.broadinstitute.org/genomes/Plasmodium_3D7_v2.1.genome Plasmodium_3D7_v2.1 Plasmodium (3D7 v5.5) http://igvdata.broadinstitute.org/genomes/Plasmodium_3D7_v5.5.genome Plasmodium_3D7_v5.5 Plasmodium (6.1) http://igvdata.broadinstitute.org/genomes/Plasmodium_6.1.genome Plasmodium_6.1 Plasmodium (3D7 V7.0) http://igvdata.broadinstitute.org/genomes/PlasmoDB_7.0.genome PlasmoDB_7.0 Plasmodium (3D7 V8.2) http://igvdata.broadinstitute.org/genomes/PlasmoDB_7.0.genome PlasmoDB_8.2 P. vivax (7.2) http://igvdata.broadinstitute.org/genomes/pvivax.genome pvivax S. cerevisiae (GSM552910) http://igvdata.broadinstitute.org/genomes/GSM552910.genome GSM552910 S. cerevisiae (sacCer1) http://igvdata.broadinstitute.org/genomes/sacCer1.genome sacCer1 S. cerevisiae (sacCer2) http://igvdata.broadinstitute.org/genomes/sacCer2.genome sacCer2 S. cerevisiae (sacCer3) http://igvdata.broadinstitute.org/genomes/sacCer3.genome sacCer3 S. cerevisiae (sk1) http://igvdata.broadinstitute.org/genomes/sk1.genome sk1 S. cerevisiae (Y55) http://igvdata.broadinstitute.org/genomes/Y55.genome Y55 S. cerevisiae (EF3 r62) http://igv.broadinstitute.org/genomes/sacCer62.genome sacCer62 S. pombe (7/09) http://igvdata.broadinstitute.org/genomes/spombe_709.genome spombe_709 S. pombe (EF 1.55) http://igvdata.broadinstitute.org/genomes/spombe_1.55.genome spombe_1.55 C. albicans http://igvdata.broadinstitute.org/genomes/candida.genome candida M. oryzae (mg8) http://igvdata.broadinstitute.org/genomes/mg8.genome mg8 S.purpuratus (2.1+) http://igvdata.broadinstitute.org/genomes/spur_2.1.genome spur_2.1 S. purpuratus (2.5) http://igvdata.broadinstitute.org/genomes/spur_2.5.genome spur_2.5 S. purpuratus (3.0) http://igvdata.broadinstitute.org/genomes/spur_3.0.genome spur_3.0 C. elegans (WS220) http://igv.broadinstitute.org/genomes/WS220.genome WS220 C. elegans (WS201) http://igvdata.broadinstitute.org/genomes/WS201.genome WS201 C. elegans (ce6) http://igvdata.broadinstitute.org/genomes/ce6.genome ce6 C. elegans (ce4) http://igvdata.broadinstitute.org/genomes/ce4.genome ce4 D. melanogaster (dm3) http://igvdata.broadinstitute.org/genomes/dm3.genome dm3 D. melanogaster (dm2) http://igvdata.broadinstitute.org/genomes/dm2.genome dm2 D. melanogaster (5.9) http://igvdata.broadinstitute.org/genomes/dmel_5.9.genome dmel_5.9 D. melanogaster (r5.22) http://igvdata.broadinstitute.org/genomes/dmel_r5.22.genome dmel_r5.22 D. melanogaster (r5.33) http://igvdata.broadinstitute.org/genomes/dmel_r5.33.genome dmel_r5.33 T. castaneum (2.0) http://igvdata.broadinstitute.org/genomes/tcas_2.0.genome tcas_2.0 T. castaneum (3.0) http://igvdata.broadinstitute.org/genomes/tcas_3.0.genome tcas_3.0 Neurospora crassa (v3) http://igvdata.broadinstitute.org/genomes/ncrassa_v3.genome ncrassa_v3 N. crassa OR74A (NC10) http://igvdata.broadinstitute.org/genomes/nc10.genome nc10 G. lamblia (2.0) http://igvdata.broadinstitute.org/genomes/Glamblia_2.0.genome Glamblia_2.0 T. gondii (ME49) http://igvdata.broadinstitute.org/genomes/T_gondii_me49.genome me49 T. brucei (927 v2.5) http://igvdata.broadinstitute.org/genomes/tb927.genome tb927 T. brucei (927 v4.0) http://igvdata.broadinstitute.org/genomes/tbrucei927_4.0.genome tbrucei927_4.0 T. brucei gambiense http://igvdata.broadinstitute.org/genomes/tbgambi.genome tbgambi T. brucei gambiense (v4.0) http://igvdata.broadinstitute.org/genomes/tbgambi_4.0.genome tbgambi_4.0 L. major Friedlin http://igvdata.broadinstitute.org/genomes/lmjr.genome lmjr L. major Friedlin (v4.0) http://igvdata.broadinstitute.org/genomes/lmjr_4.0.genome lmjr_4.0 A. nidulans (4.1) http://igvdata.broadinstitute.org/genomes/anidulans_4.1.genome anidulans_4.1 C. thermocellum (NC_009012) http://igv.broadinstitute.org/genomes/NC_009012.genome NC_009012 B. pertussis (Tohama I NC_002929.2) http://igvdata.broadinstitute.org/genomes/NC_002929.genome NC_002929 E. coli K-12 MG1655 (U00096.2) http://igvdata.broadinstitute.org/genomes/U00096.2.genome U00096.2 E. coli K-12 MG1655 (NC_000913.2) http://igvdata.broadinstitute.org/genomes/NC_000913.2.genome NC_000913.2 E. coli O157:H7 EDL933 (NC_002655.2) http://igv.broadinstitute.org/genomes/NC_002655.2.genome NC_002655.2 C. savignyi (v2.1 reftigs) http://igvdata.broadinstitute.org/genomes/CSavignyi_v2.1.genome CSavignyi_v2.1 A. thaliana (TAIR 8) http://igvdata.broadinstitute.org/genomes/tair8.genome tair8 A. thaliana (TAIR 9) http://igvdata.broadinstitute.org/genomes/tair9.genome tair9 A. thaliana (TAIR 10) http://igv.broadinstitute.org/genomes/tair10.genome tair10 O. Sativa (release 6) http://igvdata.broadinstitute.org/genomes/O_Sativa_r6.genome O_Sativa_r6 O. Sativa (release 6.1) http://igvdata.broadinstitute.org/genomes/osativa_6.1.genome osativa_6.1 O. Sativa (release 7) http://igv.broadinstitute.org/genomes/osativa_7.genome osativa_7 Maize (B73 4a.53) http://igvdata.broadinstitute.org/genomes/B73.genome B73 Maize (ZmB73 5a) http://igvdata.broadinstitute.org/genomes/ZmB73_5a.genome ZmB73_5a Tomato (ITAG2.3) http://igvdata.broadinstitute.org/genomes/ITAG2.3.genome ITAG2.3 P. patens (V 1.2) http://igvdata.broadinstitute.org/genomes/ppatens_1.2.genome ppatens_1.2 D. discoideum (05-13-2009) http://igvdata.broadinstitute.org/genomes/D.discoideum.genome D.discoideum Foxy4287 http://igv.broadinstitute.org/genomes/Foxy4287.genome Foxy4287